Basic Information
Locus ID:
gene-BS78_10G021200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1568272 | 1572534 | + | gene-BS78_10G021200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 42,789.36 Da | 40.02 | 92.83 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 194 | 224 | 4.3E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 178 | 2.9E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 46 | 75 | 4.4E-7 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 246 | 3.65E-46 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 351 | 3.85E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 358 | 2.7E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 111 | 9.6E-24 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 112 | 250 | 2.0E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.3E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 193 | 222 | 0.0028 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 144 | 3.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 149 | 178 | 2.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.23 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 193 | 219 | 10.816076 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.5057 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 136 | 8.667035 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 136 | 8.68292 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 193 | 225 | 11.5676 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 149 | 181 | 11.27379 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 149 | 176 | 10.524231 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.601871 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 346 | 9.951762 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 312 | 321 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 394 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_025813714.1 | probable E3 ubiquitin-protein ligase XBOS36 [Panicum hallii] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HM68 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G343700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology