Basic Information
Locus ID:
gene-BS78_10G007500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 557078 | 560488 | - | gene-BS78_10G007500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 28,549.03 Da | 29.09 | 69.11 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 19 | 78 | 3.2E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 13 | 112 | 1.21E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 13 | 85 | 1.1E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 17 | 86 | 8.4E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 90 | 10.462521 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 271 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_034590690.1 | binding partner of ACD11 1-like [Setaria viridis] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811SAV6 | RRM domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS62123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology