Basic Information
Locus ID:
gene-BS78_10G000500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 46386 | 49298 | + | gene-BS78_10G000500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 65,196.31 Da | 37.70 | 101.26 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 232 | 274 | 9.0954E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 437 | 475 | 3.8E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 228 | 298 | 6.9E-25 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 355 | 393 | 9.8E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 303 | 2.31E-33 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 321 | 598 | 2.0E-48 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 309 | 437 | 3.1E-24 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 301 | 1.8E-33 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 438 | 603 | 1.9E-27 | IPR011989 |
| SMART | SM00185 | arm_5 | 436 | 476 | 0.049 | IPR000225 |
| SMART | SM00185 | arm_5 | 477 | 517 | 46.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 354 | 394 | 4.2E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 231 | 294 | 5.5E-38 | IPR003613 |
| SMART | SM00185 | arm_5 | 518 | 558 | 7.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 395 | 435 | 3.8 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 365 | 407 | 13.3524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 227 | 301 | 49.068863 | IPR003613 |
| Coils | Coil | Coil | 584 | 604 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_020399204.1 | uncharacterized protein LOC100279362 isoform X1 [Zea mays] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811S773 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS62192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology