Basic Information
Locus ID:
gene-BS78_10G000400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 37735 | 46003 | + | gene-BS78_10G000400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 106,289.12 Da | 55.10 | 77.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 557 | 608 | 5.7E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 375 | 428 | 3.4E-15 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 705 | 765 | 7.75E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 617 | 671 | 6.79E-12 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 866 | 963 | 6.46E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 609 | 699 | 1.0E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 707 | 770 | 4.3E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 623 | 663 | 6.8E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 709 | 766 | 0.0046 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 707 | 768 | 8.626699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 710 | 765 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 624 | 662 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 281 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_025811403.1 | uncharacterized protein LOC112889129 isoform X2 [Panicum hallii] | 0 |
| TrEMBL | A0A2S3HML6 | PHD-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G359800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology