Basic Information
Locus ID:
gene-BS78_09G261500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 44474774 | 44478972 | - | gene-BS78_09G261500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 97,366.98 Da | 44.25 | 101.13 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 30 | 50 | 0.01 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 569 | 774 | 1.4E-36 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 311 | 3.03E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 249 | 481 | 2.62E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 547 | 866 | 6.7E-67 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 2 | 68 | 1.13E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 223 | 485 | 2.8E-72 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 637 | 890 | 1.6E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 543 | 636 | 1.8E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 222 | 1.3E-63 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 28 | 52 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 174 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 347 | 370 | 97.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 564 | 884 | 5.5E-25 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 371 | 395 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 126 | 149 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 67.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 564 | 884 | 33.304665 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 681 | 693 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 371 | 384 | 4.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 153 | 166 | 4.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 813 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_002441645.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 [Sorghum bicolor] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A811RKI2 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS54234 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology