Basic Information
Locus ID:
gene-BS78_09G251600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 43497302 | 43502645 | - | gene-BS78_09G251600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 93,474.89 Da | 45.20 | 83.16 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 528 | 661 | 1.2558E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 530 | 660 | 1.5E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 683 | 726 | 8.8E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 490 | 728 | 1.05E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 489 | 661 | 3.9E-96 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 662 | 737 | 3.9E-96 | - |
| SMART | SM00382 | AAA_5 | 526 | 663 | 8.0E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 633 | 652 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 217 | - | - |
| Coils | Coil | Coil | 713 | 738 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | K3Z3U6 | AAA domain-containing protein OS=Setaria italica OX=4555 GN=101785471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology