Basic Information
Locus ID:
gene-BS78_09G246700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 43155749 | 43156683 | - | gene-BS78_09G246700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 19,476.79 Da | 44.06 | 87.35 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 113 | 175 | 6.55013E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 35 | 95 | 1.0E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 112 | 174 | 8.2E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 18 | 175 | 1.92E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 7 | 103 | 1.4E-17 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 180 | 2.5E-23 | - |
| SMART | SM00054 | efh_1 | 36 | 64 | 0.0011 | IPR002048 |
| SMART | SM00054 | efh_1 | 113 | 141 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 149 | 177 | 2.8E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 72 | 100 | 1.7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 32 | 67 | 14.262346 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 68 | 103 | 10.161722 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 109 | 144 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 145 | 180 | 12.979158 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 158 | 170 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 45 | 57 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 122 | 134 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 81 | 93 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | NP_001152942.1 | calmodulin [Zea mays] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | B6SJJ2 | Calmodulin OS=Zea mays OX=4577 GN=100280614 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology