Basic Information
Locus ID:
gene-BS78_09G241700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 42747090 | 42755042 | - | gene-BS78_09G241700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 123,459.82 Da | 35.93 | 71.83 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 983 | 1015 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 896 | 931 | 0.064 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 810 | 1120 | 1.98E-49 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 332 | 608 | 6.34E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 333 | 612 | 6.1E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 783 | 1123 | 1.2E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 849 | 888 | 0.075 | IPR001680 |
| SMART | SM00320 | WD40_4 | 891 | 931 | 1.4E-5 | IPR001680 |
| SMART | SM00220 | serkin_6 | 422 | 611 | 0.0099 | IPR000719 |
| SMART | SM00320 | WD40_4 | 1026 | 1065 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1082 | 1121 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 800 | 838 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 934 | 973 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 977 | 1015 | 1.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 898 | 940 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 984 | 1017 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 984 | 1017 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 873 | 897 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 875 | 889 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1002 | 1016 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 918 | 932 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 875 | 889 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1002 | 1016 | 1.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 284 | - | - |
| Coils | Coil | Coil | 638 | 672 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_025809436.1 | protein SUPPRESSOR OF PHYA-105 1-like [Panicum hallii] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1E5UM33 | Protein SPA1-RELATED 2 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0025053 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology