Basic Information
Locus ID:
gene-BS78_09G226300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 41650646 | 41660794 | + | gene-BS78_09G226300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 137,746.41 Da | 49.86 | 77.38 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 292 | 420 | 1.83373E-17 | - |
| CDD | cd12108 | Hr-like | 633 | 789 | 3.10451E-26 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1100 | 1143 | 1.77269E-18 | - |
| CDD | cd12108 | Hr-like | 38 | 165 | 3.3136E-32 | - |
| Pfam | PF14599 | Zinc-ribbon | 1148 | 1205 | 1.6E-22 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 41 | 167 | 7.1E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 289 | 422 | 5.3E-9 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 972 | 1047 | 7.5E-19 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 631 | 790 | 2.8E-8 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1099 | 1147 | 7.06E-6 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 963 | 1028 | 2.48E-18 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1038 | 1093 | 3.4E-15 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1095 | 1144 | 1.9E-7 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1172 | 1213 | 1.6E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 33 | 185 | 2.0E-33 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 629 | 847 | 1.9E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 291 | 438 | 5.2E-18 | - |
| SMART | SM00184 | ring_2 | 1101 | 1142 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 965 | 1034 | 25.774536 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1037 | 1100 | 29.635014 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1101 | 1142 | 10.851695 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 885 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_002440198.2 | zinc finger protein BRUTUS [Sorghum bicolor] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RN61 | Zinc finger protein BRUTUS OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS54600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology