Basic Information
Locus ID:
gene-BS78_09G219000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 41079213 | 41081899 | + | gene-BS78_09G219000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 22,901.54 Da | 48.38 | 64.14 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 27 | 159 | 2.1819E-50 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 27 | 160 | 4.0E-31 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 15 | 160 | 4.32E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 3 | 159 | 2.0E-57 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 27 | 160 | 3.0E-35 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 16 | 160 | 46.331188 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 208 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73040.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_039837307.1 | jacalin-related lectin 19-like isoform X1 [Panicum virgatum] | 0 |
| Q9SSM3 | Jacalin-related lectin 19 OS=Arabidopsis thaliana OX=3702 GN=JAL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RUU9 | Jacalin-type lectin domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS57127 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology