Basic Information
Locus ID:
gene-BS78_09G195900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 39328266 | 39335485 | + | gene-BS78_09G195900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 88,236.79 Da | 42.10 | 64.52 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02947 | TRX_family | 713 | 803 | 5.54959E-37 | - |
| CDD | cd09612 | Jacalin | 257 | 387 | 1.44264E-42 | IPR033734 |
| CDD | cd09612 | Jacalin | 450 | 576 | 2.2967E-43 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 3.08505E-48 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 1.2E-30 | IPR001229 |
| Pfam | PF00085 | Thioredoxin | 713 | 802 | 6.1E-25 | IPR013766 |
| Pfam | PF01419 | Jacalin-like lectin domain | 447 | 576 | 3.9E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 257 | 387 | 1.6E-27 | IPR001229 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 693 | 806 | 1.42E-31 | IPR036249 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 244 | 386 | 2.88E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 151 | 1.11E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 433 | 576 | 5.63E-41 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 240 | 387 | 7.3E-48 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 152 | 2.9E-57 | IPR036404 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 679 | 808 | 6.6E-37 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 430 | 576 | 2.1E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 6.8E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 447 | 577 | 1.5E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 257 | 388 | 1.1E-34 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 50.514313 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 436 | 577 | 49.567013 | IPR001229 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 683 | 807 | 15.208793 | IPR013766 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 246 | 388 | 47.766205 | IPR001229 |
| ProSitePatterns | PS00194 | Thioredoxin family active site. | 725 | 743 | - | IPR017937 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 683 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_025805904.1 | LOW QUALITY PROTEIN: jacalin-related lectin 3-like [Panicum hallii] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RWN6 | Jacalin-related lectin 3 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS57392 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology