Basic Information
Locus ID:
gene-BS78_09G191200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
zinc-binding in reverse transcriptase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 38887127 | 38887429 | + | gene-BS78_09G191200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 10,314.52 Da | 83.58 | 65.84 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040258107.1 | uncharacterized protein LOC120975546 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A8T0TYB2 | PRONE domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4KG379203 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH09.43, CH02.943 |
| Poaceae | Lolium multiflorum | 18 | gene-QYE76_000604, gene-QYE76_000934, gene-QYE76_008470 ... |
| Poaceae | Oryza coarctata | 1 | Oco13G011900 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g29350.1 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G123800, gene-BS78_02G063400, gene-BS78_K225200 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503714 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029590, Chr06G006790, Chr07G015220, Chr25G003250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G423000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG041210, gene_TRIDC6BG030410 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS2B02G451200.1.cds1, TraesCS7B02G453300.1.cds1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22972, nbis-gene-39044 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g15460 |