Basic Information
Locus ID:
gene-BS78_09G182800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 38258695 | 38264642 | + | gene-BS78_09G182800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 69,339.87 Da | 48.71 | 95.53 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 347 | 613 | 2.85439E-89 | - |
| Pfam | PF13855 | Leucine rich repeat | 117 | 175 | 1.1E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 345 | 609 | 5.5E-38 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 186 | 208 | 4.9E-4 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 63 | 9.6E-9 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 345 | 610 | 6.07E-60 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 227 | 1.44E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 418 | 631 | 5.0E-52 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 182 | 1.8E-36 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 416 | 3.7E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 227 | 1.4E-10 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 92 | 115 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 116 | 139 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 215 | 6.7 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 118 | 139 | 7.011191 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 341 | 613 | 31.891264 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 186 | 207 | 7.034293 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 347 | 378 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 141 | 154 | 8.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 184 | 197 | 8.5E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 316 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58300.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_034588719.1 | probable inactive receptor kinase At5g58300 [Setaria viridis] | 0 |
| Q9LVM0 | Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana OX=3702 GN=At5g58300 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6VDE3 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G208000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology