Basic Information
Locus ID:
gene-BS78_09G172900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 37315171 | 37316990 | + | gene-BS78_09G172900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 20,748.45 Da | 38.99 | 88.61 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 141 | 183 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 188 | 2.08E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 187 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.710573 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004961784.1 | RING-H2 finger protein ATL66 [Setaria italica] | 0 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 0 | |
| TrEMBL | K3Z9V0 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101757934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg10041, jg14255, jg2570, jg32191, jg34116 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17014 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035347 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21464, Sbi_jg22352 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16279 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016478 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24617, Sgl29770, Sgl62826, Sgl67441 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018868, gene:ENSEOMG00000020768 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0020070, CQ.Regalona.r1.2AG0021850 ... |
| Apiaceae | Apium graveolens | 1 | Ag5G01430 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G003410 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23399, Ftri6G22186 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G11110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022203m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g09430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g053930.2N, BniB07g025140.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0103 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0114 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno02g09540, gene.Cymno04g16810, gene.Cymno05g18010 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g32320, gene.Thate06g02680, gene.Thate06g03270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3644, nbisL1-mrna-3932 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011779, Pov_00040548 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3760, AH05.2084, BH02.3770, BH05.2218, BH07.4086 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038720, gene-QOZ80_1BG0088740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071970.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014118, gene-QYE76_014119, gene-QYE76_014120 ... |
| Poaceae | Oryza coarctata | 1 | Oco10G011890 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g61470.1, LOC_Os05g39260.1, LOC_Os11g02250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G172900 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G018760, Chr02G005640, Chr05G027750, Chr18G011720 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G478500, Tel3E01G562100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG043930, gene_TRIDC1BG049760 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G295900.1.cds1, TraesCS1D02G296300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb290050_P001, Zm00001eb351800_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11517, nbis-gene-14199, nbis-gene-24187 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g27030, Zma_g28412, Zma_g8929 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.148, evm.TU.LG10.2, evm.TU.LG17.971 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37280, gene.Posoc07g13900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.937 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25891 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16218 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1465 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.229 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001511 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17499 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9276 |
| Salicaceae | Populus euphratica | 1 | populus_peu06572 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614271 |
| Solanaceae | Solanum chilense | 1 | SOLCI001110300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022343 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21580_chr08_+ |
| Zosteraceae | Zostera marina | 3 | Zosma02g21740.v3.1, Zosma06g27080.v3.1, Zosma06g29200.v3.1 |