Basic Information
Locus ID:
gene-BS78_09G170700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 37114195 | 37124947 | - | gene-BS78_09G170700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 167,666.19 Da | 49.79 | 84.58 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1132 | 1522 | 1.78945E-113 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1178 | 1524 | 2.9E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1124 | 1517 | 1.19E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 155 | 534 | 2.55E-30 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1406 | 1522 | 3.5E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1078 | 1296 | 4.0E-40 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 104 | 536 | 9.3E-42 | IPR011989 |
| SMART | SM00119 | hect_3 | 1142 | 1524 | 7.5E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1143 | 1524 | 61.807106 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_004963722.2 | E3 ubiquitin-protein ligase UPL4 [Setaria italica] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811RWX8 | HECT-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS57678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology