Basic Information
Locus ID:
gene-BS78_09G170500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 37101878 | 37107383 | + | gene-BS78_09G170500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 148,358.44 Da | 46.83 | 68.75 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 214 | 296 | 9.67102E-28 | - |
| Pfam | PF00855 | PWWP domain | 210 | 297 | 4.7E-19 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 206 | 315 | 8.42E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 205 | 304 | 3.4E-24 | - |
| SMART | SM00293 | PWWP_4 | 210 | 271 | 7.0E-11 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 212 | 273 | 15.011087 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1295 | 1381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1362 | 1381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1295 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1321 | 1354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1231 | 1254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_025806246.1 | uncharacterized protein LOC112884854 [Panicum hallii] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6T0V1 | PWWP domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G35370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology