Basic Information
Locus ID:
gene-BS78_09G158800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 35787079 | 35788235 | - | gene-BS78_09G158800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 24,166.98 Da | 65.74 | 96.81 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 144 | 187 | 8.03672E-17 | - |
| Pfam | PF13639 | Ring finger domain | 144 | 187 | 8.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 190 | 6.82E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 192 | 6.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 145 | 186 | 7.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 187 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 116 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47610.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039803454.1 | RING-H2 finger protein ATL79-like [Panicum virgatum] | 0 |
| Q9FGJ6 | RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5WEK8 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003167 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH05.2178, AH05.2286, CH05.2391, CH05.2484 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371710, gene-QOZ80_5BG0419140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075190.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014503, gene-QYE76_014504, gene-QYE76_016977 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G010680, Oco10G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g36310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G158800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G010400, Chr22G007240 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G447100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G274500.1.cds1, TraesCS1B02G284000.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14045 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27123 |