Basic Information
Locus ID:
gene-BS78_09G141000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 34164827 | 34167107 | + | gene-BS78_09G141000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 41,722.60 Da | 50.64 | 105.38 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 125 | 184 | 5.8E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 69 | 2.7E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 370 | 4.19E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 216 | 2.2E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 218 | 373 | 1.5E-22 | IPR032675 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 218 | 231 | 8.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 239 | 252 | 8.8E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_002439784.1 | probable LRR receptor-like serine/threonine-protein kinase IRK [Sorghum bicolor] | 0 |
| TrEMBL | A0A811RXP0 | LRRNT_2 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS57948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology