Basic Information
Locus ID:
gene-BS78_09G135300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 33499358 | 33504112 | - | gene-BS78_09G135300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 38,287.89 Da | 75.38 | 64.99 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 289 | 329 | 8.228E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 288 | 334 | 1.2E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 289 | 335 | 3.79E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 339 | 3.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 290 | 328 | 0.001 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 290 | 329 | 11.545086 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 42 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039838464.1 | probable E3 ubiquitin-protein ligase LUL4 [Panicum virgatum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6VFM9 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_3G258100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology