Basic Information
Locus ID:
gene-BS78_09G114100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 29445947 | 29447381 | + | gene-BS78_09G114100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 19,888.86 Da | 44.56 | 67.83 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 8.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 159 | 1.19E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 160 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 152 | 3.4E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 107 | 160 | 0.0076 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 153 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 189 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002439642.1 | RING-H2 finger protein ATL39 [Sorghum bicolor] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RQY0 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS55726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology