Basic Information
Locus ID:
gene-BS78_09G104400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 25488233 | 25488904 | + | gene-BS78_09G104400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 25,175.78 Da | 53.81 | 52.51 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 96 | 113 | 9.095433 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 92 | - | - |
| Coils | Coil | Coil | 87 | 118 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039827061.1 | uncharacterized protein LOC120688749 [Panicum virgatum] | 0 |
| TrEMBL | A0A3L6EVE1 | BED-type domain-containing protein OS=Zea mays OX=4577 GN=Zm00014a_031037 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |