Basic Information
Locus ID:
gene-BS78_09G088600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13502644 | 13526169 | - | gene-BS78_09G088600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 140,080.19 Da | 45.49 | 78.63 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 807 | 863 | 6.27417E-32 | - |
| Pfam | PF01426 | BAH domain | 564 | 677 | 6.1E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 872 | 1241 | 6.0E-35 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 824 | 861 | 6.1E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 789 | 862 | 4.4E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 701 | 1242 | 1.14E-76 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 704 | 1258 | 6.0E-213 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1026 | 1208 | 6.0E-213 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 497 | 665 | 2.4E-47 | IPR043151 |
| SMART | SM00298 | chromo_7 | 807 | 866 | 2.1E-6 | IPR000953 |
| SMART | SM00439 | BAH_4 | 563 | 680 | 5.0E-21 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 702 | 1249 | 45.330612 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 808 | 861 | 11.942101 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 563 | 680 | 18.7092 | IPR001025 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1224 | 1242 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 878 | 890 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 831 | 851 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 967 | 980 | 2.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 703 | 719 | 2.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 921 | 935 | 2.2E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_025806233.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [Panicum hallii] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3H701 | DNA (cytosine-5-)-methyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_3G074800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology