Basic Information
Locus ID:
gene-BS78_09G055000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6001502 | 6005284 | + | gene-BS78_09G055000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 53,827.15 Da | 50.13 | 93.82 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 363 | 387 | 0.0098 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 81 | 122 | 1.0E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 186 | 234 | 7.3E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 290 | 320 | 1.9E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 262 | 284 | 0.006 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 263 | 451 | 2.78E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 12 | 143 | 2.0E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 305 | 483 | 5.0E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 147 | 250 | 2.2E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 290 | 323 | 8.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 189 | 222 | 8.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 84 | 117 | 5.8E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 82 | 116 | 11.750571 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | 10.05157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 288 | 322 | 11.651919 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23330.2 | - | 0 |
| RefSeq | XP_039803247.1 | putative pentatricopeptide repeat-containing protein At1g68930 [Panicum virgatum] | 0 |
| Q9LW63 | Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8T0U611 | Pentatricopeptide repeat-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG210602 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |