Basic Information
Locus ID:
gene-BS78_09G047200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4561260 | 4580198 | + | gene-BS78_09G047200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 80,287.97 Da | 52.25 | 86.96 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 3 | 199 | 5.0E-33 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 289 | 546 | 2.5E-46 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 577 | 665 | 1.6E-16 | IPR000535 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 201 | 7.79E-47 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 571 | 698 | 8.63E-23 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 270 | 553 | 4.45E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 238 | 2.0E-52 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 571 | 697 | 2.4E-27 | IPR013783 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 265 | 356 | 3.3E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 570 | 5.5E-50 | - |
| SMART | SM00220 | serkin_6 | 286 | 559 | 4.4E-34 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 575 | 695 | 19.586376 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 204 | 27.029167 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 286 | 556 | 32.993717 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 418 | 430 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 12. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_039801974.1 | uncharacterized protein LOC120666246 isoform X2 [Panicum virgatum] | 0 |
| O65472 | Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8T0UK86 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG233400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH05.3525, CH04.920, CH05.3680, Contig522.28 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0380720, gene-QOZ80_5BG0439080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0225170.1, HORVU.MOREX.r3.7HG0748020.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_036867, gene-QYE76_036876, gene-QYE76_036884 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_06G051900, gene-BS78_08G093000 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401585 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G157900, Tel7E01G940400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG004390, gene_TRIDC7AG075260 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS3A02G073900.1, TraesCS3D02G522300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb164620_P001 |