Basic Information
Locus ID:
gene-BS78_09G045900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4380853 | 4386962 | - | gene-BS78_09G045900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 64,894.23 Da | 51.68 | 94.15 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 77 | 123 | 1.4E-19 | IPR041101 |
| Pfam | PF18511 | F-box | 20 | 57 | 1.6E-7 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 52 | 8.37E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 545 | 6.02E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 2.5E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 590 | 1.5E-167 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 442 | 465 | 590.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 140 | 165 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 382 | 406 | 0.29 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 515 | 200.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_002440601.1 | transport inhibitor response 1-like protein Os05g0150500 [Sorghum bicolor] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811RT11 | Transport inhibitor response 1-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS56161 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology