HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-BS78_09G031100
Species & Taxonomic ID: Paspalum vaginatum & 158149
Genome Assembly: GCA_026573395.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr9 2817421 2818791 - gene-BS78_09G031100
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.96 49,568.18 Da 45.54 86.05 -0.18
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 36 72 7.4E-8 IPR001810
SUPERFAMILY SSF81383 F-box domain 20 70 5.49E-8 IPR036047
Gene3D G3DSA:1.20.1280.50 - 35 74 8.1E-7 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_015613601.1 uncharacterized protein LOC107275399 [Oryza sativa Japonica Group] 0
TrEMBL A0A4U6TDT6 F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G100200v2 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 31 AH01.2484, AH01.2722, AH02.158, AH02.159, AH05.199, AH08.382 ...
AH07.1620, AH08.1501, AH08.383, BH01.2829, BH01.2909, BH01.3055, BH04.289, BH04.292, BH04.295, BH07.4000, BH08.1480, BH08.388, BH08.389, BH08.391, BH08.392, CH01.3031, CH01.3110, CH01.3277, CH02.174, CH02.176, CH04.314, CH08.465, CH08.466, CH08.467, CH08.626
Poaceae Eleusine coracana subsp. coracana 19 gene-QOZ80_1AG0023930, gene-QOZ80_1BG0050170 ...
gene-QOZ80_1BG0050470, gene-QOZ80_1BG0088840, gene-QOZ80_2AG0111140, gene-QOZ80_2AG0111270, gene-QOZ80_2AG0118900, gene-QOZ80_2BG0164560, gene-QOZ80_2BG0172670, gene-QOZ80_3BG0266740, gene-QOZ80_5AG0403950, gene-QOZ80_5BG0428940, gene-QOZ80_5BG0452860, gene-QOZ80_6AG0524120, gene-QOZ80_8AG0618250, gene-QOZ80_8BG0645670, gene-QOZ80_8BG0645710, gene-QOZ80_9AG0679000, gene-QOZ80_9BG0702710
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.5HG0430290.1.CDS1 ...
HORVU.MOREX.r3.5HG0529170.1.CDS1, HORVU.MOREX.r3.7HG0651420.1.CDS1
Poaceae Lolium multiflorum 1 gene-QYE76_001051
Poaceae Oryza coarctata 6 Oco15G005160, Oco19G001460, Oco19G002160, Oco20G001180 ...
Oco20G002300, Oco23G004210
Poaceae Oryza sativa 9 LOC_Os01g54770.1, LOC_Os05g02700.1, LOC_Os05g36980.1 ...
LOC_Os10g01430.1, LOC_Os10g10420.1, LOC_Os10g12200.1, LOC_Os10g17930.1, LOC_Os10g17940.1, LOC_Os11g05460.1
Poaceae Paspalum vaginatum 10 gene-BS78_03G013300, gene-BS78_03G261400 ...
gene-BS78_05G050800, gene-BS78_06G133800, gene-BS78_07G051600, gene-BS78_07G051800, gene-BS78_07G051900, gene-BS78_08G089000, gene-BS78_08G089200, gene-BS78_09G031100
Poaceae Puccinellia tenuiflora 14 Pt_Chr0104514, Pt_Chr0108045, Pt_Chr0108046, Pt_Chr0108047 ...
Pt_Chr0108049, Pt_Chr0108050, Pt_Chr0108062, Pt_Chr0505745, Pt_Chr0600855, Pt_Chr0600858, Pt_Chr0601579, Pt_Chr0605889, Pt_Chr0605891, Pt_Chr0704516
Poaceae Sporobolus alterniflorus 8 Chr01G011950, Chr01G012230, Chr12G024420, Chr12G024710 ...
Chr19G013430, Chr20G008020, Chr20G011350, Chr29G011260
Poaceae Thinopyrum elongatum 2 Tel6E01G248200, Tel6E01G248800
Poaceae Triticum dicoccoides 1 gene_TRIDC5BG076130
Poaceae Triticum aestivum 14 TraesCS2A02G361300.1.cds1, TraesCS2A02G361800.1.cds1 ...
TraesCS3B02G435400.1.cds1, TraesCS3B02G570000.1.cds1, TraesCS3D02G511700.1.cds1, TraesCS4A02G363600.1.cds1, TraesCS5B02G509800.1.cds1, TraesCS5D02G509900.1.cds1, TraesCS6B02G141800.1.cds1, TraesCS6B02G141900.1.cds1, TraesCS6D02G102800.1.cds1, TraesCS6D02G102900.1.cds1, TraesCS6D02G103000.1.cds1, TraesCSU02G146700.1.cds1
Poaceae Zea mays 1 Zm00001eb250820_P001
Poaceae Zoysia japonica 14 nbis-gene-12116, nbis-gene-24318, nbis-gene-34021 ...
nbis-gene-34022, nbis-gene-41629, nbis-gene-41630, nbis-gene-41632, nbis-gene-41633, nbis-gene-41638, nbis-gene-43891, nbis-gene-43892, nbis-gene-58465, nbis-gene-58817, nbis-gene-59004
Poaceae Zoysia macrostachya 11 Zma_g15266, Zma_g15268, Zma_g15269, Zma_g15270, Zma_g15271 ...
Zma_g15272, Zma_g15273, Zma_g15274, Zma_g23644, Zma_g23645, Zma_g23646
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.