Basic Information
Locus ID:
gene-BS78_09G024900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 2266173 | 2272206 | + | gene-BS78_09G024900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 134,836.78 Da | 44.01 | 90.02 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 815 | 1196 | 1.1223E-103 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 860 | 1198 | 4.6E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 812 | 1191 | 1.7E-88 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 8 | 328 | 1.28E-18 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 814 | 1077 | 8.4E-39 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1083 | 1195 | 1.5E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 2 | 337 | 7.7E-25 | IPR011989 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 945 | 1042 | 8.4E-39 | - |
| SMART | SM00119 | hect_3 | 825 | 1198 | 4.3E-85 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 839 | 1198 | 59.947018 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039799050.1 | E3 ubiquitin-protein ligase UPL4-like [Panicum virgatum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1E5UXM8 | HECT-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology