Basic Information
Locus ID:
gene-BS78_09G017700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1607219 | 1609436 | - | gene-BS78_09G017700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 38,282.31 Da | 35.26 | 89.20 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 5 | 176 | 4.00706E-58 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 203 | 357 | 1.25717E-77 | - |
| Pfam | PF00190 | Cupin | 201 | 343 | 4.7E-25 | IPR006045 |
| Pfam | PF00190 | Cupin | 11 | 158 | 2.2E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 13 | 349 | 7.89E-50 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 200 | 363 | 1.2E-50 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 180 | 2.7E-28 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 200 | 344 | 2.4E-23 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 4 | 161 | 1.7E-27 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 263 | 279 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 216 | 236 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 321 | 338 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 299 | 317 | 3.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 281 | 296 | 3.0E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034588534.1 | glutelin type-D 1-like [Setaria viridis] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6VK22 | 11S seed storage protein OS=Setaria viridis OX=4556 GN=SEVIR_3G061600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology