Basic Information
Locus ID:
gene-BS78_09G010100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1014439 | 1015949 | + | gene-BS78_09G010100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 42,710.12 Da | 77.73 | 60.98 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 202 | 241 | 2.76228E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 10 | 45 | 3.2E-15 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 274 | 381 | 6.0E-37 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 199 | 241 | 1.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 247 | 8.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 247 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 200 | 240 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 200 | 241 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 395 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_047095906.1 | E3 ubiquitin-protein ligase RDUF2-like [Lolium rigidum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RU03 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS56541 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology