Basic Information
Locus ID:
gene-BS78_09G005100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein FAR1-RELATED SEQUENCE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 586591 | 591000 | + | gene-BS78_09G005100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 88,154.49 Da | 47.48 | 69.61 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10551 | MULE transposase domain | 369 | 460 | 8.5E-24 | IPR018289 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 125 | 207 | 4.1E-7 | IPR004330 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 651 | 687 | 9.754815 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 61 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38180.1 | FAR1-related sequence 5. | 0 |
| RefSeq | XP_034595561.1 | protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Setaria viridis] | 0 |
| Q9SZL8 | Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UCL4 | SWIM-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G119201v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology