Basic Information
Locus ID:
gene-BS78_08G163400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
beta-N-acetylhexosaminidase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29605809 | 29606962 | - | gene-BS78_08G163400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 33,797.44 Da | 33.57 | 63.59 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 78 | 313 | 1.65708E-116 | - |
| CDD | cd00035 | ChtBD1 | 28 | 65 | 1.06997E-14 | - |
| Pfam | PF00187 | Chitin recognition protein | 28 | 65 | 5.5E-12 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 77 | 313 | 5.7E-129 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 74 | 319 | 8.44E-104 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 27 | 65 | 1.57E-10 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 161 | 222 | 1.4E-118 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 26 | 69 | 1.1E-14 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 77 | 314 | 1.4E-118 | - |
| SMART | SM00270 | ChitinBD_3 | 28 | 65 | 3.9E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 320 | 1.1E-125 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 26 | 67 | 10.61235 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 38 | 57 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 226 | 236 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 95 | 117 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 51 | 58 | 1.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 1.1E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 36 | 44 | 1.1E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_002439136.2 | chitinase 12 [Sorghum bicolor] | 0 |
| Q42993 | Chitinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7DTV9 | chitinase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G008000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology