Basic Information
Locus ID:
gene-BS78_08G163100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
thaumatin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29588578 | 29589321 | + | gene-BS78_08G163100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 17,992.08 Da | 24.59 | 67.85 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 24 | 157 | 8.7E-29 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 23 | 176 | 8.11E-41 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 21 | 177 | 2.4E-42 | IPR037176 |
| SMART | SM00205 | tha2 | 23 | 177 | 2.3E-24 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 159 | 7.8E-36 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 153 | 177 | 1.5 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 23 | 177 | 26.700607 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 74 | 89 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 167 | 176 | 1.0E-22 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 61 | 72 | 1.0E-22 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 39 | 48 | 1.0E-22 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 19 | 31 | 1.0E-22 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 74 | 103 | 1.0E-22 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_025808117.1 | thaumatin-like protein [Panicum hallii] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7EJL6 | Thaumatin-like protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G479800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology