Basic Information
Locus ID:
gene-BS78_08G163000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29583413 | 29584000 | + | gene-BS78_08G163000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 19,713.21 Da | 42.62 | 79.18 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 39 | 164 | 2.0E-31 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 32 | 192 | 3.01E-46 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 33 | 191 | 1.2E-44 | IPR037176 |
| SMART | SM00205 | tha2 | 35 | 191 | 4.9E-30 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 171 | 194 | 3.6 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 3 | 173 | 1.5E-42 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 32 | 193 | 27.414251 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 76 | 87 | 4.2E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 54 | 63 | 4.2E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 181 | 190 | 4.2E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 126 | 142 | 4.2E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 88 | 117 | 4.2E-38 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 34 | 46 | 4.2E-38 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_025809288.1 | thaumatin-like pathogenesis-related protein 3 [Panicum hallii] | 0 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HG34 | Thaumatin-like protein OS=Panicum hallii OX=206008 GN=PAHAL_3G506700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology