Basic Information
Locus ID:
gene-BS78_08G162800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
response to biotic stimulus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29577707 | 29578715 | + | gene-BS78_08G162800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.26 | 18,174.98 Da | 34.91 | 63.09 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 28 | 178 | 1.69659E-71 | - |
| Pfam | PF00314 | Thaumatin family | 32 | 139 | 3.1E-33 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 27 | 178 | 1.57E-52 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 26 | 178 | 1.0E-49 | IPR037176 |
| SMART | SM00205 | tha2 | 28 | 178 | 7.8E-39 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 145 | 178 | 7.1E-4 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 149 | 1.3E-43 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 25 | 178 | 35.41172 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 81 | 96 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 27 | 39 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 168 | 177 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 47 | 56 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 81 | 110 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 69 | 80 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 119 | 135 | 1.4E-42 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_002443622.1 | thaumatin-like protein [Sorghum bicolor] | 0 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 0 | |
| TrEMBL | C5YSV2 | Thaumatin-like protein OS=Sorghum bicolor OX=4558 GN=SORBI_3008G183300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology