Basic Information
Locus ID:
gene-BS78_08G162700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29573731 | 29574574 | + | gene-BS78_08G162700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.12 | 18,552.39 Da | 28.74 | 60.82 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 37 | 183 | 1.85417E-73 | - |
| Pfam | PF00314 | Thaumatin family | 39 | 142 | 6.4E-34 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 32 | 183 | 4.97E-55 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 33 | 152 | 5.3E-45 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 153 | 183 | 7.9E-6 | IPR037176 |
| SMART | SM00205 | tha2 | 35 | 183 | 2.9E-44 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 153 | 1.8E-45 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 151 | 183 | 1.6E-4 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 32 | 183 | 36.156387 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 87 | 102 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 124 | 140 | 1.4E-43 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 54 | 63 | 1.4E-43 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 87 | 116 | 1.4E-43 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 75 | 86 | 1.4E-43 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 34 | 46 | 1.4E-43 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 173 | 182 | 1.4E-43 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 0 |
| RefSeq | XP_002442584.1 | thaumatin-like pathogenesis-related protein 4 [Sorghum bicolor] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RHT1 | Thaumatin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS52714 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology