Basic Information
Locus ID:
gene-BS78_08G162500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29558108 | 29558915 | - | gene-BS78_08G162500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 17,545.35 Da | 29.13 | 65.61 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 28 | 173 | 6.80213E-69 | - |
| Pfam | PF00314 | Thaumatin family | 30 | 133 | 2.5E-31 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 23 | 173 | 1.31E-51 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 143 | 173 | 1.6E-5 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 24 | 142 | 1.8E-41 | IPR037176 |
| SMART | SM00205 | tha2 | 26 | 173 | 4.4E-35 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 145 | 6.6E-42 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 139 | 173 | 5.5E-4 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 23 | 173 | 33.806023 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 78 | 93 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 66 | 77 | 3.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 114 | 130 | 3.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 163 | 172 | 3.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 25 | 37 | 3.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 45 | 54 | 3.2E-39 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 78 | 107 | 3.2E-39 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19320.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_039802982.1 | thaumatin-like pathogenesis-related protein 3 [Panicum virgatum] | 0 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RHT1 | Thaumatin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS52714 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology