Basic Information
Locus ID:
gene-BS78_08G162400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29551806 | 29552599 | + | gene-BS78_08G162400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 17,268.01 Da | 33.02 | 61.30 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 25 | 169 | 9.8894E-62 | - |
| Pfam | PF00314 | Thaumatin family | 29 | 129 | 3.8E-29 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 22 | 169 | 3.4E-47 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 23 | 169 | 8.3E-45 | IPR037176 |
| SMART | SM00205 | tha2 | 25 | 169 | 8.2E-29 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 142 | 9.4E-39 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 138 | 169 | 0.0052 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 22 | 169 | 33.29406 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 65 | 76 | 2.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 111 | 127 | 2.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 44 | 53 | 2.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 159 | 168 | 2.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 77 | 106 | 2.3E-37 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 24 | 36 | 2.3E-37 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73620.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_039793781.1 | thaumatin-like pathogenesis-related protein 3 [Panicum virgatum] | 0 |
| P50695 | Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa OX=4498 GN=RASTL-1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811R9N9 | Thaumatin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50034 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology