Basic Information
Locus ID:
gene-BS78_08G153700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 28657035 | 28664486 | + | gene-BS78_08G153700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 106,155.35 Da | 52.31 | 77.79 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 768 | 932 | 2.28859E-67 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 338 | 931 | 1.3E-80 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 335 | 933 | 5.1E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 320 | 541 | 3.3E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 675 | 944 | 2.6E-58 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 337 | 934 | 55.18116 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 876 | 893 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 338 | 353 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 104 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_002442564.2 | ubiquitin carboxyl-terminal hydrolase 8 [Sorghum bicolor] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811R9V6 | Ubiquitin carboxyl-terminal hydrolase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50125 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology