Basic Information
Locus ID:
gene-BS78_08G142600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 27737394 | 27742552 | - | gene-BS78_08G142600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 52,508.10 Da | 45.77 | 86.35 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03018 | Dirigent-like protein | 24 | 148 | 2.1E-10 | IPR004265 |
| Pfam | PF00069 | Protein kinase domain | 180 | 379 | 2.7E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 180 | 433 | 3.1E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 248 | 458 | 1.1E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 162 | 247 | 6.8E-18 | - |
| SMART | SM00220 | serkin_6 | 175 | 417 | 4.4E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 175 | 444 | 30.916018 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 294 | 306 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 181 | 202 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61560.2 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_052137408.1 | U-box domain-containing protein 70-like [Oryza glaberrima] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0J4A5 | Dirigent protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH02.1761 |
| Poaceae | Oryza sativa | 4 | LOC_Os11g40370.2, LOC_Os11g40380.1, LOC_Os11g40400.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G142600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G032630 |