Basic Information
Locus ID:
gene-BS78_08G130100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 26387341 | 26391611 | + | gene-BS78_08G130100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 57,111.77 Da | 59.16 | 70.16 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 135 | 187 | 1.75083E-29 | - |
| Pfam | PF02809 | Ubiquitin interaction motif | 40 | 55 | 0.11 | IPR003903 |
| Pfam | PF12315 | Protein DA1 | 284 | 496 | 7.3E-99 | IPR022087 |
| Pfam | PF02809 | Ubiquitin interaction motif | 72 | 85 | 0.073 | IPR003903 |
| Pfam | PF00412 | LIM domain | 135 | 189 | 1.1E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 161 | 219 | 3.52E-11 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 160 | 2.14E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 130 | 208 | 1.3E-16 | - |
| SMART | SM00726 | uim | 40 | 59 | 0.48 | IPR003903 |
| SMART | SM00726 | uim | 72 | 91 | 0.0052 | IPR003903 |
| SMART | SM00132 | lim_4 | 134 | 186 | 2.7E-15 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 133 | 193 | 12.790899 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 40 | 59 | 9.015204 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 72 | 91 | 10.435258 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 135 | 169 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 447 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039840055.1 | protein DA1-related 1-like isoform X1 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T0VAX0 | LIM zinc-binding domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG564600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology