Basic Information
Locus ID:
gene-BS78_08G118600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 24897127 | 24898461 | + | gene-BS78_08G118600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 48,662.13 Da | 50.23 | 90.86 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 25 | 66 | 7.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 82 | 1.31E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 78 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 28 | 69 | 2.8E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 69 | 9.497469 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015611413.1 | uncharacterized protein LOC4346729 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A835BI82 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_039921 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH05.3855, AH05.3915, BH05.3927, CH05.4131, CH05.4136 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4BG0348850, gene-QOZ80_5AG0395480 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G118600, gene-BS78_08G119600 ... |