Basic Information
Locus ID:
gene-BS78_08G105300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23540822 | 23548141 | + | gene-BS78_08G105300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 83,655.58 Da | 55.85 | 70.09 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 119 | 220 | 2.58373E-16 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 488 | 734 | 6.95984E-133 | - |
| Pfam | PF00989 | PAS fold | 113 | 218 | 2.0E-15 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 483 | 734 | 8.0E-70 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 456 | 733 | 2.43E-85 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 115 | 217 | 7.5E-21 | IPR035965 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 560 | 754 | 1.2E-63 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 121 | 226 | 3.2E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 475 | 559 | 1.1E-31 | - |
| SMART | SM00220 | serkin_6 | 482 | 742 | 4.2E-61 | IPR000719 |
| SMART | SM00091 | pas_2 | 110 | 176 | 1.1E-10 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 115 | 220 | 4.6E-14 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 108 | 179 | 18.537378 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 482 | 743 | 45.092419 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 601 | 613 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 705 | 727 | 2.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 595 | 613 | 2.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 642 | 652 | 2.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 556 | 569 | 2.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 661 | 683 | 2.2E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 356 | - | - |
| Coils | Coil | Coil | 727 | 754 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_002442325.1 | RGS domain-containing serine/threonine-protein kinase A [Sorghum bicolor] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RB94 | PAS domain-containing protein tyrosine kinase family protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50781 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology