Basic Information
Locus ID:
gene-BS78_08G104800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23452050 | 23455025 | - | gene-BS78_08G104800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 54,862.21 Da | 76.76 | 46.43 | -1.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 366 | 447 | 3.8E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 366 | 448 | 9.4E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 346 | - | - |
| Coils | Coil | Coil | 400 | 427 | - | - |
| Coils | Coil | Coil | 372 | 392 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_002443359.1 | eukaryotic translation initiation factor 5B [Sorghum bicolor] | 0 |
| TrEMBL | A0A835E5N0 | PAPA-1 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_052818 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology