Basic Information
Locus ID:
gene-BS78_08G104000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23398248 | 23399390 | + | gene-BS78_08G104000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 41,982.33 Da | 48.72 | 80.21 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 37 | 168 | 6.77374E-20 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 202 | 313 | 9.0E-21 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 191 | 313 | 1.69E-21 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 35 | 173 | 1.1E-25 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 182 | 314 | 1.1E-27 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 35 | 170 | 5.6E-24 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 315 | 378 | 5.2E-17 | - |
| SMART | SM00225 | BTB_4 | 208 | 315 | 3.4E-18 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 36 | 167 | 16.478809 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 208 | 276 | 12.76384 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_022681031.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria italica] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZD34 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_3G336000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0442140 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065528, gene-QYE76_065564 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G103900, gene-BS78_08G104000 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50030 |