Basic Information
Locus ID:
gene-BS78_08G103900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23394965 | 23396127 | + | gene-BS78_08G103900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 41,803.31 Da | 55.49 | 82.09 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 40 | 173 | 1.201E-26 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 207 | 311 | 2.2E-14 | IPR000210 |
| Pfam | PF00917 | MATH domain | 62 | 173 | 9.4E-5 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 195 | 310 | 5.89E-17 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 38 | 177 | 1.5E-26 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 186 | 311 | 6.8E-22 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 312 | 375 | 5.0E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 38 | 177 | 2.0E-25 | IPR008974 |
| SMART | SM00225 | BTB_4 | 213 | 312 | 1.8E-12 | IPR000210 |
| SMART | SM00061 | math_3 | 44 | 155 | 0.0055 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 213 | 274 | 11.667693 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 39 | 172 | 19.547148 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_022681031.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria italica] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZD34 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_3G336000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0442140 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065528, gene-QYE76_065564 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G103900, gene-BS78_08G104000 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50030 |