Basic Information
Locus ID:
gene-BS78_08G100300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Bulb-type mannose-specific lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 22870711 | 22878277 | - | gene-BS78_08G100300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 86,750.71 Da | 30.60 | 86.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 330 | 409 | 2.14843E-15 | - |
| CDD | cd00028 | B_lectin | 35 | 148 | 3.51575E-27 | IPR001480 |
| Pfam | PF00954 | S-locus glycoprotein domain | 206 | 311 | 1.9E-22 | IPR000858 |
| Pfam | PF00069 | Protein kinase domain | 511 | 775 | 2.2E-40 | IPR000719 |
| Pfam | PF01453 | D-mannose binding lectin | 74 | 174 | 5.6E-29 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 332 | 394 | 5.6E-15 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 474 | 781 | 1.11E-64 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 61 | 212 | 1.31E-21 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 561 | 785 | 2.3E-48 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 22 | 145 | 3.0E-16 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 560 | 1.2E-23 | - |
| SMART | SM00108 | blect_4 | 34 | 148 | 1.8E-27 | IPR001480 |
| SMART | SM00219 | tyrkin_6 | 494 | 781 | 6.6E-18 | IPR020635 |
| SMART | SM00473 | ntp_6 | 333 | 408 | 3.2E-5 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 1 | 786 | 2.7E-199 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 28 | 145 | 15.918873 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 332 | 409 | 9.337637 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 487 | 786 | 34.449516 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 604 | 616 | - | IPR008266 |
| Coils | Coil | Coil | 516 | 536 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 0 |
| RefSeq | XP_039789421.1 | receptor-like serine/threonine-protein kinase SD1-8 isoform X1 [Panicum virgatum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z037 | Receptor-like serine/threonine-protein kinase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 32 | AH01.3355, AH02.1435, AH02.995, AH03.348, AH03.629, AH06.571 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G100300, gene-BS78_08G101000 |