Basic Information
Locus ID:
gene-BS78_08G094400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Trafficking protein particle complex subunit 10, TRAPPC10
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 21643551 | 21653702 | - | gene-BS78_08G094400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 138,407.66 Da | 45.13 | 88.99 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12584 | Trafficking protein particle complex subunit 10, TRAPPC10 | 1124 | 1202 | 5.8E-8 | IPR022233 |
| Pfam | PF11817 | Foie gras liver health family 1 | 575 | 653 | 2.9E-5 | IPR021773 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 520 | - | - |
| Coils | Coil | Coil | 185 | 205 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54440.1 | CLUB. Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. | 0 |
| RefSeq | XP_004964896.1 | trafficking protein particle complex II-specific subunit 130 homolog [Setaria italica] | 0 |
| Q2QNU0 | Trafficking protein particle complex II-specific subunit 130 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TRS130 PE=2 SV=1 | 0 | |
| TrEMBL | K3XUV1 | Trafficking protein particle complex II-specific subunit 130 homolog OS=Setaria italica OX=4555 GN=101772825 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38306 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7417 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008275 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g087330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18742, Sbi_jg37175 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4997 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006940 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23037, Sgl28149 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011706, gene:ENSEOMG00000030489 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0020290, CQ.Regalona.r1.4AG0020380 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160620 |
| Apiaceae | Apium graveolens | 1 | Ag3G00350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719770 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.3057.V1.1, AsparagusV1_08.3058.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G01565, Ftri15G01057 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012467m.g.v1.0, Thhalv10015732m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16420.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g032920.2N, BniB05g034290.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G1101, Ceq01G1630, Ceq01G1631, Ceq01G1632 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G1276, Cgl01G1782, Cgl01G1785, Cgl01G1795 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g16190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031420 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19359 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.774, BH06.822, CH06.857 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393470, gene-QOZ80_5BG0441680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001930 |
| Poaceae | Oryza coarctata | 2 | Oco23G008140, Oco24G007750 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g36760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G094400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703817 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016830, Chr19G009480, Chr27G006990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G178900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG014120, gene_TRIDC5BG016090 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G091200.1, TraesCS5B02G098200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb137170_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30308 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25958 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2084, evm.TU.LG14.1258 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21943 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10306 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18593, nbisL1-mrna-18594 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.663 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6775 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12565 |
| Salicaceae | Populus euphratica | 2 | populus_peu17532, populus_peu17533 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619341 |
| Solanaceae | Solanum chilense | 1 | SOLCI003377500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025931 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6885 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0262 |
| Zosteraceae | Zostera marina | 1 | Zosma03g32660.v3.1 |