Basic Information
Locus ID:
gene-BS78_08G088300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 20621586 | 20626709 | + | gene-BS78_08G088300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 33,194.17 Da | 48.90 | 55.62 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 4.2E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 35 | 111 | 8.3E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 213 | 270 | 2.5E-25 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 212 | 4.42E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 31 | 100 | 1.11E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 102 | 159 | 2.88E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 237 | 276 | 1.1E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 210 | 1.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 208 | 8.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 209 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 101 | 165 | 32.907627 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 28 | 99 | 25.826199 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | NP_001149168.1 | RING finger and CHY zinc finger domain-containing protein 1 [Zea mays] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EHM4 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G426100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology