Basic Information
Locus ID:
gene-BS78_08G079900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
WRKY4
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19524370 | 19530634 | + | gene-BS78_08G079900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 52,169.71 Da | 54.45 | 53.25 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 227 | 283 | 6.1E-24 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 384 | 441 | 1.8E-25 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 375 | 443 | 2.88E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 225 | 285 | 2.48E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 212 | 286 | 1.5E-27 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 368 | 444 | 2.4E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 383 | 442 | 7.0E-40 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 226 | 284 | 2.5E-34 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 378 | 443 | 37.412945 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 227 | 285 | 23.192444 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 69 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | NP_001130833.1 | Probable WRKY transcription factor 3 [Zea mays] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A811RCU0 | WRKY transcription factor 3 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS51050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology