Basic Information
Locus ID:
gene-BS78_08G053600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 7796253 | 7801244 | - | gene-BS78_08G053600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 111,462.10 Da | 37.46 | 101.83 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 208 | 267 | 1.1E-10 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 716 | 1000 | 5.3E-39 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 423 | 482 | 1.1E-10 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 110 | 132 | 1.4 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 46 | 80 | 4.5E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 521 | 576 | 8.1E-9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 270 | 579 | 1.18E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 365 | 2.75E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 1001 | 4.24E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 794 | 1019 | 3.2E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 494 | 582 | 5.3E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 301 | 370 | 1.9E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 371 | 493 | 1.2E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 205 | 6.5E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 206 | 300 | 2.0E-23 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 676 | 793 | 1.3E-16 | - |
| SMART | SM00369 | LRR_typ_2 | 421 | 444 | 0.97 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 131 | 1.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 539 | 562 | 0.79 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 373 | 397 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 159 | 184 | 250.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 710 | 1021 | 3.3E-21 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 563 | 585 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 254 | 278 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 206 | 230 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 445 | 469 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 253 | 180.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 138 | 160 | 7.180607 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 110 | 131 | 7.642649 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 710 | 1002 | 34.237507 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 853 | 865 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 233 | 246 | 1.4E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 539 | 552 | 1.4E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_039798584.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 [Panicum virgatum] | 0 |
| Q9M2Z1 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana OX=3702 GN=BAM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0TZI2 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG073000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology